have you checked what is in the feeds.xml and rss.xml files when the list appears to disappear? as generally if feeds.xml gets cleared (which no one truely knows how / why it happens) then what you're seeing is expected. these files are in %appdata%\Winamp\plugins\ml when entered into Explorer.
the best recommendation is to backup those files specifically and / or use the Winamp Backup Tool by koopa which can automate the procedure. otherwise i know of some changes to the handling of those files which may make it into the next release to auto-backup and fix some quirks with the saving which may help with the issue, though i don't know when that update will happen or if the changes will be kept in for the release.
-daz
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